edu.stanford.math.plex4.interop

Class Plex3ToPlex4BarcodeAdapter

java.lang.Object

edu.stanford.math.plex4.interop.Plex3ToPlex4BarcodeAdapter

All Implemented Interfaces:

edu.stanford.math.primitivelib.autogen.functional.ObjectObjectFunction<PersistenceInterval[],BarcodeCollection<java.lang.Integer>>

public class Plex3ToPlex4BarcodeAdapter
extends java.lang.Object
implements edu.stanford.math.primitivelib.autogen.functional.ObjectObjectFunction<PersistenceInterval[],BarcodeCollection<java.lang.Integer>>

This class implements a function object which converts plex 3 barcodes to plex 4 barcodes. It is designed to convert the result of the computeRawIntervals function in plex 3 to the type BarcodeCollection\ so that it can be compared with the results of the plex 4 homology algorithms. Note that even though this function object accepts arguments of type PersistenceInterval[], it is required that the elements in the array are of type PersistenceInterval.Int. The reason for this is that the internal plex 3 homology algorithm computes the integral filtration intervals, but then converts the results to the PersistenceInterval class. Thus, this requirement is mainly for legacy reasons.

Author:

Andrew Tausz

Method Summary

Methods

Modifier and Type	Method and Description
BarcodeCollection<java.lang.Integer>	evaluate(PersistenceInterval[] argument)
static Plex3ToPlex4BarcodeAdapter	getInstance()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getInstance

public static Plex3ToPlex4BarcodeAdapter getInstance()

evaluate

public BarcodeCollection<java.lang.Integer> evaluate(PersistenceInterval[] argument)

Specified by:

evaluate in interface edu.stanford.math.primitivelib.autogen.functional.ObjectObjectFunction<PersistenceInterval[],BarcodeCollection<java.lang.Integer>>