edu.stanford.math.plex4.autogen.homology

Class ObjectAbsoluteHomology<F,U>

java.lang.Object

edu.stanford.math.plex4.homology.interfaces.AbstractPersistenceAlgorithm<T>

edu.stanford.math.plex4.homology.interfaces.AbstractPersistenceBasisAlgorithm<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>

edu.stanford.math.plex4.autogen.homology.ObjectPersistenceAlgorithm<F,U>

edu.stanford.math.plex4.autogen.homology.ObjectPersistentHomology<F,U>

edu.stanford.math.plex4.autogen.homology.ObjectAbsoluteHomology<F,U>

public class ObjectAbsoluteHomology<F,U>
extends ObjectPersistentHomology<F,U>

Field Summary

Fields inherited from class edu.stanford.math.plex4.autogen.homology.ObjectPersistenceAlgorithm

basisComparator, chainModule, field, filteredComparator, maxDimension, minDimension

Constructor Summary

Constructors

Constructor and Description
ObjectAbsoluteHomology(edu.stanford.math.primitivelib.autogen.algebraic.ObjectAbstractField<F> field, java.util.Comparator<U> basisComparator, int minDimension, int maxDimension) This constructor initializes the object with a field and a comparator on the basis type.

Method Summary

Methods

Modifier and Type	Method and Description
protected AnnotatedBarcodeCollection<java.lang.Integer,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>	getAnnotatedIntervals(edu.stanford.math.primitivelib.autogen.pair.ObjectObjectPair<gnu.trove.THashMap<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>,gnu.trove.THashMap<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>> RV_pair, AbstractFilteredStream<U> stream)
protected BarcodeCollection<java.lang.Integer>	getIntervals(edu.stanford.math.primitivelib.autogen.pair.ObjectObjectPair<gnu.trove.THashMap<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>,gnu.trove.THashMap<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>> RV_pair, AbstractFilteredStream<U> stream)

Methods inherited from class edu.stanford.math.plex4.autogen.homology.ObjectPersistentHomology

computeAnnotatedIntervalsImpl, computeIntervalsImpl, getAnnotatedIntervals, getIntervals

Methods inherited from class edu.stanford.math.plex4.autogen.homology.ObjectPersistenceAlgorithm

computeAnnotatedIndexIntervals, computeIndexIntervals, getChainModule, getField, initializeFilteredComparator, low

Methods inherited from class edu.stanford.math.plex4.homology.interfaces.AbstractPersistenceBasisAlgorithm

computeAnnotatedIntervals

Methods inherited from class edu.stanford.math.plex4.homology.interfaces.AbstractPersistenceAlgorithm

computeIntervals

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ObjectAbsoluteHomology

public ObjectAbsoluteHomology(edu.stanford.math.primitivelib.autogen.algebraic.ObjectAbstractField<F> field,
                      java.util.Comparator<U> basisComparator,
                      int minDimension,
                      int maxDimension)

This constructor initializes the object with a field and a comparator on the basis type.

Parameters:

field - a field structure on the type F

basisComparator - a comparator on the basis type U

minDimension - the minimum dimension to compute

maxDimension - the maximum dimension to compute

Method Detail

getAnnotatedIntervals

protected AnnotatedBarcodeCollection<java.lang.Integer,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>> getAnnotatedIntervals(edu.stanford.math.primitivelib.autogen.pair.ObjectObjectPair<gnu.trove.THashMap<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>,gnu.trove.THashMap<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>> RV_pair,
                                                                                                                                               AbstractFilteredStream<U> stream)

Specified by:

getAnnotatedIntervals in class ObjectPersistentHomology<F,U>

getIntervals

protected BarcodeCollection<java.lang.Integer> getIntervals(edu.stanford.math.primitivelib.autogen.pair.ObjectObjectPair<gnu.trove.THashMap<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>,gnu.trove.THashMap<U,edu.stanford.math.primitivelib.autogen.formal_sum.ObjectSparseFormalSum<F,U>>> RV_pair,
                                                AbstractFilteredStream<U> stream)

Specified by:

getIntervals in class ObjectPersistentHomology<F,U>